PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca54.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family LBD
Protein Properties Length: 246aa    MW: 27382.6 Da    PI: 7.607
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca54.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.16e-38311311100
   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
              +C aCk+lrrkC+k+Cv+apyf +eq +++fa+vhk+FGasn +kl+ ++p+++r d++ +l+yeA  r+rdPvyG++++i++lqqq+ +++aela ++++
  Dca54.1  31 PCGACKYLRRKCVKGCVFAPYFDSEQgTAHFAAVHKVFGASNASKLILRVPPNKRLDTVVTLCYEALSRVRDPVYGCLSHIFALQQQVVNMQAELAFAQAK 131
              7***********************9989********************************************************************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.89530132IPR004883Lateral organ boundaries, LOB
PfamPF031958.6E-3731129IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MSNTHHQQQP WQNNNNINNN NNNINNSNNG PCGACKYLRR KCVKGCVFAP YFDSEQGTAH  60
FAAVHKVFGA SNASKLILRV PPNKRLDTVV TLCYEALSRV RDPVYGCLSH IFALQQQVVN  120
MQAELAFAQA KLSTVHRHAP TFPIVDHGQT PQLLLDQIAA LSTTTTTTPS NNVMTSTPFF  180
FDNTTSTHSH QPMSSTLAAE LSNFYSMSDY NQHDDNGVFE DGDLQSLTRE FVSKYLPGVK  240
FKSEPQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010692268.11e-99PREDICTED: LOB domain-containing protein 19
SwissprotO813221e-64LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A0J8BJ782e-99A0A0J8BJ78_BETVU; Uncharacterized protein
STRINGGLYMA03G02631.19e-71(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.16e-63LOB domain-containing protein 31